Project: Example project
Released by: RIC Analyst (cribioinfo@uic.edu)
Date: Sept 3, 2025.
Results from a metagenomic co-assembly of all samples. For the assembly all samples were combined into a single sequence dataset for assembly. After assembly, the sequence data for each sample individually was mapped back to the contigs to determine read counts per sample. The contigs were annotated using CAT and EggNOG mapper and binned using MetaBAT.
| File Name | File Type | Description |
|---|---|---|
| report.html | report | Basic processing report |
| metagenomic_assembly.zip | result | ZIP compressed FASTA file of all contigs in the assembly |
| contig_counts.txt | result | Raw read counts for each contig |
| orf_counts.txt | result | Raw read counts for predicted ORFs |
| contig_data.txt | result | Details and normalized read counts (RPKM) of the contigs |
| contig_annotations.txt | Gene annotations of predicted ORFs, as TSV file | result |
| annotation_results.zip | result | ZIP file of annotation results as GBK and GFF format with FASTA files of amino acid sequences for each ORF |
| bins_data.txt | Details the metagenomic bins | result |
| taxa_raw_counts.xlsx | Excel spreadsheet of taxonomic summaries from phylum to species level - raw sequence counts | result |
| taxa_raw_counts.zip | ZIP archive of taxonomic summaries from phylum to species level result - raw sequence counts | result |
| kegg_raw_counts.xlsx | Excel spreadsheet of functional gene (KEGG ortholog) summaries - raw sequence counts | result |
| kegg_raw_counts.zip | ZIP archive of functional gene (KEGG ortholog) summaries - raw sequence counts | result |