Amplicon Unmodified% Modified% Reads_in_input Reads_aligned_all_amplicons Reads_aligned Unmodified Modified Discarded Insertions Deletions Substitutions Only Insertions Only Deletions Only Substitutions Insertions and Deletions Insertions and Substitutions Deletions and Substitutions Insertions Deletions and Substitutions Reference 33.18656652 66.81343348 12102 11583 11583 3844 7739 0 2666 4899 454 2465 4820 174 0 201 79 0